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FAQs - Proteome Identification / Quantification
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/ Post-translational modifications
/ Protein Quantification
/ Data Analysis
[+] Which type of samples can I send for protein identification analysis?
[+] How much material is needed for protein identification experiments?
[+] What will FGCZ provide as results of a protein identification experiment?
[+] Do you offer large-scale phosphopeptides identification and quantification?
[+] Can you identify all the post-translational modifications (PTMs) on my protein? How much material is required for the analysis?
[+] Can you identify the N- and/or C-Terminal protein sequence(s)?
[+] Which type of protein quantification do you offer?
[+] How do you perform large scale proteome quantifications?
[+] How do you perform targeted proteome quantifications?
[+] Why do you always request a preliminary QC test, prior to any quantification experiment?
[+] How many replicates do you request for a relative quantification experiment?
[+] How should we prepare the samples for a label-free quantification analysis (LFQ)?
[+] Do you accept tissue samples?
[+] Do you accept formalin-fixed, paraffin-embedded (FFPE) samples?
[+] Which is your protocol for protein digestion?
[+] Do you offer single-cell proteomics?
[+] "Which software do you use for the analysis of DDA or DIA experiments?"
[+] How do you perform the statistical analyses for your protein quantification experiments?
[+] How can I change some settings in Scaffold or PEAKS software?
[+] What can I do if I cant open the Scaffold file?
[+] Could you suggest some software for follow-up analysis of proteomics dataset?
[+] Could you suggest software that may help me studying my protein (e.g., visualization, computation, modifications, ...)?