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Proteomics > Which service should I request? > Proteome Identification / Quantification

Proteome Identification and Quantification



General description

We offer full-service support for most of the proteome identification and quantification workflows. After a project discussion, we will perform the sample preparation, mass spectrometry and bioinformatics data analysis.

List of applications and services

FGCZ routinely supports the following Proteome Identification and Quantification services, but it offers many additional services not listed below.

Applications (examples) Which service to order
Protein identification in simple or complex mixtures (i.e., gels, extracts, )Protein/Peptide Identification
Biomarker discovery in body fluids, tissues, cells, FFPEsProteome Quantification - Label-Free
High-throughput proteomics quantificationProteome Quantification - Label-Free
Deep coverage proteome quantification Proteome Quantification - TMT
Identification / quantification of proteins from low-input material (ideally 500-5000 cells)Proteome Quantification - Label-Free
(Low input analysis info - please contact us before ordering)
Large-scale phosphoproteomics analysis (with label-free approach) Phosphopeptide Quantification - Label-Free
High coverage phosphoproteomics analysis (with label-based approach) Phosphopeptide Quantification - TMT
Analysis of post-translational modifications (i.e. phospho, ubiquitin, acetyl, methyl)Analysis of selected PTMs
Proteome-wide identification of protein N-Termini (TAILS)N-Terminal characterization - TAILS
Setup of a quantification assay for a set of target proteins (panels, validation studies)Targeted Quantification - Assay Setup
Quantification of target proteins (panels, validation studies)Targeted Quantification
Any analysis not covered in the list above Other (please contact us before ordering)


In some cases, we also offer:
Applications (examples) Which service to order
Custom data analysis on FGCZ datasets Bioinformatics analysis (only in special cases - please contact us before ordering)
Acquisition of LC-MS dataData acquisition (LC-MS/MS) (only in special cases - please contact us before ordering)
Peptide/proteins HPLC fractionation Other (please contact us before ordering)


If you don't find what you are looking for, or you are interested in special applications, please contact us at proteomics at fgcz.ethz.ch



Created by paolo. Last Modification: 2023-04-14 15:05 by paolo.